alphagenome.data.genome.Junction
================================

.. currentmodule:: alphagenome.data.genome

.. autoclass:: Junction





Attributes
~~~~~~~~~~

.. rubric:: Table

.. autosummary::

    ~Junction.acceptor
    ~Junction.donor
    ~Junction.k
    ~Junction.chromosome
    ~Junction.start
    ~Junction.end
    ~Junction.info


.. autoattribute:: Junction.acceptor
.. autoattribute:: Junction.donor
.. autoattribute:: Junction.k
.. autoattribute:: Junction.name
.. autoattribute:: Junction.negative_strand
.. autoattribute:: Junction.strand
.. autoattribute:: Junction.width
.. autoattribute:: Junction.chromosome
.. autoattribute:: Junction.start
.. autoattribute:: Junction.end
.. autoattribute:: Junction.info








Methods
~~~~~~~

.. rubric:: Table

.. autosummary::

    ~Junction.acceptor_region
    ~Junction.as_unstranded
    ~Junction.binary_mask
    ~Junction.binary_mask_stranded
    ~Junction.boundary_shift
    ~Junction.center
    ~Junction.contains
    ~Junction.copy
    ~Junction.coverage
    ~Junction.coverage_stranded
    ~Junction.dinucleotide_region
    ~Junction.donor_region
    ~Junction.from_interval_dict
    ~Junction.from_proto
    ~Junction.from_pyranges_dict
    ~Junction.from_str
    ~Junction.intersect
    ~Junction.overlap_ranges
    ~Junction.overlaps
    ~Junction.pad
    ~Junction.pad_inplace
    ~Junction.resize
    ~Junction.resize_inplace
    ~Junction.shift
    ~Junction.swap_strand
    ~Junction.to_interval_dict
    ~Junction.to_proto
    ~Junction.to_pyranges_dict
    ~Junction.truncate
    ~Junction.within_reference


.. automethod:: Junction.acceptor_region
.. automethod:: Junction.as_unstranded
.. automethod:: Junction.binary_mask
.. automethod:: Junction.binary_mask_stranded
.. automethod:: Junction.boundary_shift
.. automethod:: Junction.center
.. automethod:: Junction.contains
.. automethod:: Junction.copy
.. automethod:: Junction.coverage
.. automethod:: Junction.coverage_stranded
.. automethod:: Junction.dinucleotide_region
.. automethod:: Junction.donor_region
.. automethod:: Junction.from_interval_dict
.. automethod:: Junction.from_proto
.. automethod:: Junction.from_pyranges_dict
.. automethod:: Junction.from_str
.. automethod:: Junction.intersect
.. automethod:: Junction.overlap_ranges
.. automethod:: Junction.overlaps
.. automethod:: Junction.pad
.. automethod:: Junction.pad_inplace
.. automethod:: Junction.resize
.. automethod:: Junction.resize_inplace
.. automethod:: Junction.shift
.. automethod:: Junction.swap_strand
.. automethod:: Junction.to_interval_dict
.. automethod:: Junction.to_proto
.. automethod:: Junction.to_pyranges_dict
.. automethod:: Junction.truncate
.. automethod:: Junction.within_reference