alphagenome.data.transcript.Transcript
======================================

.. currentmodule:: alphagenome.data.transcript

.. autoclass:: Transcript





Attributes
~~~~~~~~~~

.. rubric:: Table

.. autosummary::

    ~Transcript.cds
    ~Transcript.cds_including_stop_codon
    ~Transcript.chromosome
    ~Transcript.gene_id
    ~Transcript.introns
    ~Transcript.is_coding
    ~Transcript.is_mitochondrial
    ~Transcript.is_negative_strand
    ~Transcript.is_positive_strand
    ~Transcript.protein_id
    ~Transcript.selenocysteine_pos_in_protein
    ~Transcript.selenocysteines
    ~Transcript.splice_acceptor_sites
    ~Transcript.splice_acceptors
    ~Transcript.splice_donor_sites
    ~Transcript.splice_donors
    ~Transcript.splice_regions
    ~Transcript.start_codon
    ~Transcript.stop_codon
    ~Transcript.strand
    ~Transcript.strand_int
    ~Transcript.transcript_id
    ~Transcript.transcript_interval
    ~Transcript.uniprot_id
    ~Transcript.utr3
    ~Transcript.utr5
    ~Transcript.exons
    ~Transcript.info


.. autoattribute:: Transcript.cds
.. autoattribute:: Transcript.cds_including_stop_codon
.. autoattribute:: Transcript.chromosome
.. autoattribute:: Transcript.gene_id
.. autoattribute:: Transcript.introns
.. autoattribute:: Transcript.is_coding
.. autoattribute:: Transcript.is_mitochondrial
.. autoattribute:: Transcript.is_negative_strand
.. autoattribute:: Transcript.is_positive_strand
.. autoattribute:: Transcript.protein_id
.. autoattribute:: Transcript.selenocysteine_pos_in_protein
.. autoattribute:: Transcript.selenocysteines
.. autoattribute:: Transcript.splice_acceptor_sites
.. autoattribute:: Transcript.splice_acceptors
.. autoattribute:: Transcript.splice_donor_sites
.. autoattribute:: Transcript.splice_donors
.. autoattribute:: Transcript.splice_regions
.. autoattribute:: Transcript.start_codon
.. autoattribute:: Transcript.stop_codon
.. autoattribute:: Transcript.strand
.. autoattribute:: Transcript.strand_int
.. autoattribute:: Transcript.transcript_id
.. autoattribute:: Transcript.transcript_interval
.. autoattribute:: Transcript.uniprot_id
.. autoattribute:: Transcript.utr3
.. autoattribute:: Transcript.utr5
.. autoattribute:: Transcript.exons
.. autoattribute:: Transcript.info








Methods
~~~~~~~

.. rubric:: Table

.. autosummary::

    ~Transcript.fix_truncation
    ~Transcript.from_gtf_df
    ~Transcript.offset_in_cds


.. automethod:: Transcript.fix_truncation
.. automethod:: Transcript.from_gtf_df
.. automethod:: Transcript.offset_in_cds