References#
Žiga Avsec, Natasha Latysheva, Jun Cheng, Guido Novati, Kyle R. Taylor, Tom Ward, Clare Bycroft, Lauren Nicolaisen, Eirini Arvaniti, Joshua Pan, Raina Thomas, Vincent Dutordoir, Matteo Perino, Soham De, Alexander Karollus, Adam Gayoso, Toby Sargeant, Anne Mottram, Lai Hong Wong, Pavol Drotár, Adam Kosiorek, Andrew Senior, Richard Tanburn, Taylor Applebaum, Souradeep Basu, Demis Hassabis, and Pushmeet Kohli. Alphagenome: advancing regulatory variant effect prediction with a unified dna sequence model. 2025. URL: https://storage.googleapis.com/deepmind-media/papers/alphagenome.pdf.
GTEx Consortium. The gtex consortium atlas of genetic regulatory effects across human tissues. Science, 369(6509):1318–1330, 2020.
Kishore Jaganathan, Sofia Kyriazopoulou Panagiotopoulou, Jeremy F McRae, Siavash Fazel Darbandi, David Knowles, Yang I Li, Jack A Kosmicki, Juan Arbelaez, Wenwu Cui, Grace B Schwartz, and others. Predicting splicing from primary sequence with deep learning. Cell, 176(3):535–548, 2019.
Johannes Linder, Divyanshi Srivastava, Han Yuan, Vikram Agarwal, and David R Kelley. Predicting rna-seq coverage from dna sequence as a unifying model of gene regulation. Nature Genetics, pages 1–13, 2025.