alphagenome.data.gene_annotation.TranscriptType

class alphagenome.data.gene_annotation.TranscriptType(value)

Valid Transcript types available in the GENCODE GTF.

Attributes

Table

IG_C_GENE
IG_C_PSEUDOGENE
IG_D_GENE
IG_J_GENE
IG_J_PSEUDOGENE
IG_V_GENE
IG_V_PSEUDOGENE
IG_PSEUDOGENE
MT_RRNA
MT_TRNA
TEC
TR_C_GENE
TR_D_GENE
TR_J_GENE
TR_J_PSEUDOGENE
TR_V_GENE
TR_V_PSEUDOGENE
ARTIFACT
LNCRNA
MIRNA
MISC_RNA
NON_STOP_DECAY
NONSENSE_MEDIATED_DECAY
PROCESSED_PSEUDOGENE
PROCESSED_TRANSCRIPT
PROTEIN_CODING
PROTEIN_CODING_CDS_NOT_DEFINED
PROTEIN_CODING_LOF
RRNA
RRNA_PSEUDOGENE
RETAINED_INTRON
RIBOZYME
SRNA
SCRNA
SCARNA
SNRNA
SNORNA
TRANSCRIBED_PROCESSED_PSEUDOGENE
TRANSCRIBED_UNITARY_PSEUDOGENE
TRANSCRIBED_UNPROCESSED_PSEUDOGENE
TRANSLATED_PROCESSED_PSEUDOGENE
UNITARY_PSEUDOGENE
UNPROCESSED_PSEUDOGENE
VAULT_RNA

TranscriptType.IG_C_GENE = 'IG_C_gene'

TranscriptType.IG_C_PSEUDOGENE = 'IG_C_pseudogene'

TranscriptType.IG_D_GENE = 'IG_D_gene'

TranscriptType.IG_J_GENE = 'IG_J_gene'

TranscriptType.IG_J_PSEUDOGENE = 'IG_J_pseudogene'

TranscriptType.IG_V_GENE = 'IG_V_gene'

TranscriptType.IG_V_PSEUDOGENE = 'IG_V_pseudogene'

TranscriptType.IG_PSEUDOGENE = 'IG_pseudogene'

TranscriptType.MT_RRNA = 'Mt_rRNA'

TranscriptType.MT_TRNA = 'Mt_tRNA'

TranscriptType.TEC = 'TEC'

TranscriptType.TR_C_GENE = 'TR_C_gene'

TranscriptType.TR_D_GENE = 'TR_D_gene'

TranscriptType.TR_J_GENE = 'TR_J_gene'

TranscriptType.TR_J_PSEUDOGENE = 'TR_J_pseudogene'

TranscriptType.TR_V_GENE = 'TR_V_gene'

TranscriptType.TR_V_PSEUDOGENE = 'TR_V_pseudogene'

TranscriptType.ARTIFACT = 'artifact'

TranscriptType.LNCRNA = 'lncRNA'

TranscriptType.MIRNA = 'miRNA'

TranscriptType.MISC_RNA = 'misc_RNA'

TranscriptType.NON_STOP_DECAY = 'non_stop_decay'

TranscriptType.NONSENSE_MEDIATED_DECAY = 'nonsense_mediated_decay'

TranscriptType.PROCESSED_PSEUDOGENE = 'processed_pseudogene'

TranscriptType.PROCESSED_TRANSCRIPT = 'processed_transcript'

TranscriptType.PROTEIN_CODING = 'protein_coding'

TranscriptType.PROTEIN_CODING_CDS_NOT_DEFINED = 'protein_coding_CDS_not_defined'

TranscriptType.PROTEIN_CODING_LOF = 'protein_coding_LoF'

TranscriptType.RRNA = 'rRNA'

TranscriptType.RRNA_PSEUDOGENE = 'rRNA_pseudogene'

TranscriptType.RETAINED_INTRON = 'retained_intron'

TranscriptType.RIBOZYME = 'ribozyme'

TranscriptType.SRNA = 'sRNA'

TranscriptType.SCRNA = 'scRNA'

TranscriptType.SCARNA = 'scaRNA'

TranscriptType.SNRNA = 'snRNA'

TranscriptType.SNORNA = 'snoRNA'

TranscriptType.TRANSCRIBED_PROCESSED_PSEUDOGENE = 'transcribed_processed_pseudogene'

TranscriptType.TRANSCRIBED_UNITARY_PSEUDOGENE = 'transcribed_unitary_pseudogene'

TranscriptType.TRANSCRIBED_UNPROCESSED_PSEUDOGENE = 'transcribed_unprocessed_pseudogene'

TranscriptType.TRANSLATED_PROCESSED_PSEUDOGENE = 'translated_processed_pseudogene'

TranscriptType.UNITARY_PSEUDOGENE = 'unitary_pseudogene'

TranscriptType.UNPROCESSED_PSEUDOGENE = 'unprocessed_pseudogene'

TranscriptType.VAULT_RNA = 'vault_RNA'