alphagenome.visualization.plot_components.SeqLogo

alphagenome.visualization.plot_components.SeqLogo#

class alphagenome.visualization.plot_components.SeqLogo(scores, scores_interval, fig_height=1.0, alphabet='ACGT', max_width=1000, ylabel='', ylabel_horizontal=True, ylim=None, **kwargs)[source]#: Visualizes a sequence logo.

Table

Returns the number of matplotlib axes required by the component.

SeqLogo.num_axes#: Returns the number of matplotlib axes required by the component.

Table

`get_ax_height`(axis_index)	Returns the height of the axis.
`plot_ax`(ax, axis_index, interval)	Plots the sequence logo on the given axis.

SeqLogo.get_ax_height(axis_index)[source]#

Returns the height of the axis.

SeqLogo.plot_ax(ax, axis_index, interval)[source]#

Plots the sequence logo on the given axis.

Parameters: