alphagenome.models.variant_scorers.BaseVariantScorer

Contents

alphagenome.models.variant_scorers.BaseVariantScorer#

class alphagenome.models.variant_scorers.BaseVariantScorer(value)[source]#

Enum indicating the type of variant scoring.

CENTER_MASK#: Center mask scorer.

CONTACT_MAP#: Contact map scorer, a center mask scorer that handles 2D tensors.

GENE_MASK_LFC#: Gene-mask scoring based on log fold change.

GENE_MASK_ACTIVE#: Gene-mask scoring based on active allele.

GENE_MASK_SPLICING#: Gene-mask scoring for splicing.

PA_QTL#: Polyadenylation QTL scoring.

SPLICE_JUNCTION#: Splice junction scoring.

Attributes#

Table

`CENTER_MASK`
`CONTACT_MAP`
`GENE_MASK_LFC`
`GENE_MASK_ACTIVE`
`GENE_MASK_SPLICING`
`PA_QTL`
`SPLICE_JUNCTION`

BaseVariantScorer.CENTER_MASK = 1#

BaseVariantScorer.CONTACT_MAP = 2#

BaseVariantScorer.GENE_MASK_LFC = 3#

BaseVariantScorer.GENE_MASK_ACTIVE = 4#

BaseVariantScorer.GENE_MASK_SPLICING = 5#

BaseVariantScorer.PA_QTL = 6#

BaseVariantScorer.SPLICE_JUNCTION = 7#