query_interval

query_interval#

AtlasClient.query_interval(interval, *, requested_scorers, ontology_terms=None, gene_ids=None, gene_names=None, progress_bar=True, max_workers=10)[source]#

Returns the scores for all Variants within an Interval.

Parameters:

  • interval (Interval) – Genomic interval to query. Scores are returned for all single nucleotide variants within the interval.

  • requested_scorers (Sequence[str]) – Names of the variant scorers to retrieve.

  • ontology_terms (Sequence[OntologyTerm | str] | None (default: None)) – Optional ontology terms (or CURIE strings) used to filter tracks.

  • gene_ids (Sequence[str] | None (default: None)) – Optional Ensembl gene IDs used to filter gene-level scores.

  • gene_names (Sequence[str] | None (default: None)) – Optional gene symbols used to filter gene-level scores.

  • progress_bar (bool (default: True)) – Whether to show a progress bar.

  • max_workers (int (default: 10)) – Maximum number of concurrent requests.

Return type:

Mapping[str, AnnData]

Returns:

Mapping from scorer name to an AnnData of variant scores. See query_variant for the layout.