OutputType#
- class alphagenome.models.v1.dna_output.OutputType(value)[source]#
Enumeration of all the available types of outputs.
- ATAC#
ATAC-seq tracks capturing chromatin accessibility.
- CAGE#
CAGE (Cap Analysis of Gene Expression) tracks capturing gene expression.
- DNASE#
DNase I hypersensitive site tracks capturing chromatin accessibility.
- RNA_SEQ#
RNA sequencing tracks capturing gene expression.
- CHIP_HISTONE#
ChIP-seq tracks capturing histone modifications.
- CHIP_TF#
ChIP-seq tracks capturing transcription factor binding.
- SPLICE_SITES#
Splice site tracks capturing donor and acceptor splice sites.
- SPLICE_SITE_USAGE#
Splice site usage tracks capturing the fraction of the time that each splice site is used.
- SPLICE_JUNCTIONS#
Splice junction tracks capturing split read RNA-seq counts for each junction.
- CONTACT_MAPS#
Contact map tracks capturing 3D DNA-DNA contact frequencies.
- PROCAP#
Precision Run-On sequencing and capping, used to measure gene expression.