BaseVariantScorer#
- class alphagenome.models.v1.variant_scorers.BaseVariantScorer(value)[source]#
Enum indicating the type of variant scoring.
- CENTER_MASK#
Center mask scorer.
- CONTACT_MAP#
Contact map scorer, a center mask scorer that handles 2D tensors.
- GENE_MASK_LFC#
Gene-mask scoring based on log fold change.
- GENE_MASK_ACTIVE#
Gene-mask scoring based on active allele.
- GENE_MASK_SPLICING#
Gene-mask scoring for splicing.
- PA_QTL#
Polyadenylation QTL scoring.
- SPLICE_JUNCTION#
Splice junction scoring.