fix_truncation

fix_truncation#

classmethod Transcript.fix_truncation(transcript)[source]#

Fixes CDS start and stop positions to be within coding frame.

Parameters:

transcript (Transcript) – a transcript to fix.

Return type:

Transcript

Returns:

New transcript with set start/stop codons and fixed CDS if the total length of CDS is > 6. Returns a copy of original transcript otherwise.