OutputMetadata#
- class alphagenome.models.v2.dna_output.OutputMetadata(atac=None, cage=None, dnase=None, rna_seq=None, chip_histone=None, chip_tf=None, splice_sites=None, splice_site_usage=None, splice_junctions=None, contact_maps=None, sc_gene_expression=None, sc_atac=None, sc_gene_expression_denoised=None, methylation=None)[source]#
Metadata detailing the content of model output.
- atac#
Metadata for ATAC-seq tracks.
- cage#
Metadata for CAGE tracks.
- dnase#
Metadata for DNase I hypersensitive site tracks.
- rna_seq#
Metadata for RNA sequencing tracks.
- chip_histone#
Metadata for ChIP-seq tracks capturing histone modifications.
- chip_tf#
Metadata for ChIP-seq tracks capturing transcription factor binding.
- splice_sites#
Metadata for splice site tracks.
- splice_site_usage#
Metadata for splice site usage tracks.
- splice_junctions#
Metadata for splice junction tracks.
- contact_maps#
Metadata for contact map tracks.
- sc_gene_expression#
Metadata for single-cell gene expression.
- sc_atac#
Metadata for single-cell ATAC-seq tracks.
- sc_gene_expression_denoised#
Metadata for denoised single-cell gene expression.
- methylation#
Metadata for DNA methylation tracks.
Methods
Concatenates all metadata into a single DataFrame. |
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Gets the track metadata for a given output type. |